ghmm-0.9-rc1/
ghmm-0.9-rc1/aclocal.m4
ghmm-0.9-rc1/Makefile.am
ghmm-0.9-rc1/ToDo
ghmm-0.9-rc1/acinclude.m4
ghmm-0.9-rc1/tests/
ghmm-0.9-rc1/tests/Makefile.am
ghmm-0.9-rc1/tests/randvar_test.c
ghmm-0.9-rc1/tests/data/
ghmm-0.9-rc1/tests/data/Makefile.am
ghmm-0.9-rc1/tests/data/Makefile.in
ghmm-0.9-rc1/tests/data/test.smo
ghmm-0.9-rc1/tests/data/test10.sqd
ghmm-0.9-rc1/tests/data/test100.sqd
ghmm-0.9-rc1/tests/data/viterbi.sh
ghmm-0.9-rc1/tests/root_finder_test.c
ghmm-0.9-rc1/tests/Makefile.in
ghmm-0.9-rc1/tests/label_higher_order_test.c
ghmm-0.9-rc1/tests/shmm_viterbi_test.c
ghmm-0.9-rc1/tests/test_gsl_ran_gaussian_tail.c
ghmm-0.9-rc1/tests/sequences_old_format.c
ghmm-0.9-rc1/tests/two_states_three_symbols.c
ghmm-0.9-rc1/tests/chmm_test.c
ghmm-0.9-rc1/tests/coin_toss_test.c
ghmm-0.9-rc1/tests/libxml-test.c
ghmm-0.9-rc1/tests/read_fa.c
ghmm-0.9-rc1/tests/chmm.c
ghmm-0.9-rc1/tests/sequences_test.c
ghmm-0.9-rc1/depcomp
ghmm-0.9-rc1/NEWS
ghmm-0.9-rc1/Makefile.in
ghmm-0.9-rc1/autogen.sh
ghmm-0.9-rc1/ltmain.sh
ghmm-0.9-rc1/tools/
ghmm-0.9-rc1/tools/Makefile.am
ghmm-0.9-rc1/tools/scluster.c
ghmm-0.9-rc1/tools/Makefile.in
ghmm-0.9-rc1/tools/ghmm-config.in
ghmm-0.9-rc1/tools/smo2xml.c
ghmm-0.9-rc1/tools/cluster.c
ghmm-0.9-rc1/tools/smix_hmm.c
ghmm-0.9-rc1/tools/probdist.c
ghmm-0.9-rc1/doc/
ghmm-0.9-rc1/doc/ghmm.dtd.1.0
ghmm-0.9-rc1/doc/xml_switching-example.xml
ghmm-0.9-rc1/doc/xml_cont_example.xml
ghmm-0.9-rc1/doc/xml_data_structure.fig
ghmm-0.9-rc1/doc/xml_mix_cont_example.xml
ghmm-0.9-rc1/doc/xml_example.xml
ghmm-0.9-rc1/README
ghmm-0.9-rc1/GPL.txt
ghmm-0.9-rc1/install-sh
ghmm-0.9-rc1/COPYRIGHT.txt
ghmm-0.9-rc1/missing
ghmm-0.9-rc1/INSTALL
ghmm-0.9-rc1/configure
ghmm-0.9-rc1/configure.in
ghmm-0.9-rc1/config.guess
ghmm-0.9-rc1/ghmmwrapper/
ghmm-0.9-rc1/ghmmwrapper/wrapper_arrays.i
ghmm-0.9-rc1/ghmmwrapper/wrapper_xmlfile.i
ghmm-0.9-rc1/ghmmwrapper/Makefile.am
ghmm-0.9-rc1/ghmmwrapper/wrapper_cmodel.i
ghmm-0.9-rc1/ghmmwrapper/mixture.py
ghmm-0.9-rc1/ghmmwrapper/gql.c
ghmm-0.9-rc1/ghmmwrapper/testdata/
ghmm-0.9-rc1/ghmmwrapper/testdata/d_seq.sqd
ghmm-0.9-rc1/ghmmwrapper/testdata/tiny.smo
ghmm-0.9-rc1/ghmmwrapper/testdata/test2.xml
ghmm-0.9-rc1/ghmmwrapper/testdata/tk.hmm
ghmm-0.9-rc1/ghmmwrapper/testdata/multexon-4.xml
ghmm-0.9-rc1/ghmmwrapper/testdata/multiple_hmmer.hmm
ghmm-0.9-rc1/ghmmwrapper/testdata/test10.sqd
ghmm-0.9-rc1/ghmmwrapper/testdata/model_label.xml
ghmm-0.9-rc1/ghmmwrapper/testdata/tiny.txt.sqd
ghmm-0.9-rc1/ghmmwrapper/testdata/discrete.xml
ghmm-0.9-rc1/ghmmwrapper/testdata/es_discrete_testwrite.seq
ghmm-0.9-rc1/ghmmwrapper/testdata/xml_cont_multiple.xml
ghmm-0.9-rc1/ghmmwrapper/Makefile.in
ghmm-0.9-rc1/ghmmwrapper/class_change.py
ghmm-0.9-rc1/ghmmwrapper/sclass_change.h
ghmm-0.9-rc1/ghmmwrapper/ghmm_gato/
ghmm-0.9-rc1/ghmmwrapper/ghmm_gato/xmlutil.py
ghmm-0.9-rc1/ghmmwrapper/ghmm_gato/Graph.py
ghmm-0.9-rc1/ghmmwrapper/ghmm_gato/__init__.py
ghmm-0.9-rc1/ghmmwrapper/ghmm_gato/GatoGlobals.py
ghmm-0.9-rc1/ghmmwrapper/ghmm_gato/EditObjectAttributesDialog.py
ghmm-0.9-rc1/ghmmwrapper/ghmm_gato/DataStructures.py
ghmm-0.9-rc1/ghmmwrapper/ghmm_gato/GraphUtil.py
ghmm-0.9-rc1/ghmmwrapper/ghmm_gato/HMMEd.py
ghmm-0.9-rc1/ghmmwrapper/wrapper_dpmodel.i
ghmm-0.9-rc1/ghmmwrapper/sclass_change.c
ghmm-0.9-rc1/ghmmwrapper/wrapper_dseq.i
ghmm-0.9-rc1/ghmmwrapper/wrapper_dmodel.i
ghmm-0.9-rc1/ghmmwrapper/pclasschange.c
ghmm-0.9-rc1/ghmmwrapper/wrapper_cseq.i
ghmm-0.9-rc1/ghmmwrapper/modhmmer.py
ghmm-0.9-rc1/ghmmwrapper/pclasschange.h
ghmm-0.9-rc1/ghmmwrapper/INSTALL
ghmm-0.9-rc1/ghmmwrapper/sdclass_change.h
ghmm-0.9-rc1/ghmmwrapper/ghmmwrapper.i
ghmm-0.9-rc1/ghmmwrapper/wrapper_dpseq.i
ghmm-0.9-rc1/ghmmwrapper/ghmm.py
ghmm-0.9-rc1/ghmmwrapper/setup.py
ghmm-0.9-rc1/ghmmwrapper/wrapper_alphabet.i
ghmm-0.9-rc1/ghmmwrapper/sdclass_change.c
ghmm-0.9-rc1/ghmmwrapper/ghmmunittests.py
ghmm-0.9-rc1/ghmmwrapper/ghmmhelper.py
ghmm-0.9-rc1/version.m4
ghmm-0.9-rc1/ghmm/
ghmm-0.9-rc1/ghmm/modelutil.c
ghmm-0.9-rc1/ghmm/mt19937ar.c
ghmm-0.9-rc1/ghmm/Makefile.am
ghmm-0.9-rc1/ghmm/scluster.c
ghmm-0.9-rc1/ghmm/sdfoba.c
ghmm-0.9-rc1/ghmm/scanner.h
ghmm-0.9-rc1/ghmm/matrixop.h
ghmm-0.9-rc1/ghmm/xmlreader.c
ghmm-0.9-rc1/ghmm/matrix.c
ghmm-0.9-rc1/ghmm/sdfoba.h
ghmm-0.9-rc1/ghmm/kbest.c
ghmm-0.9-rc1/ghmm/ghmm_internals.c
ghmm-0.9-rc1/ghmm/pviterbi_propagate.h
ghmm-0.9-rc1/ghmm/ghmmconfig.h.in
ghmm-0.9-rc1/ghmm/smodel.h
ghmm-0.9-rc1/ghmm/Makefile.in
ghmm-0.9-rc1/ghmm/pviterbi.c
ghmm-0.9-rc1/ghmm/reestimate.c
ghmm-0.9-rc1/ghmm/smap_classify.c
ghmm-0.9-rc1/ghmm/pmodel.c
ghmm-0.9-rc1/ghmm/sdmodel.c
ghmm-0.9-rc1/ghmm/scanner.c
ghmm-0.9-rc1/ghmm/mprintf.h
ghmm-0.9-rc1/ghmm/sgenerate.c
ghmm-0.9-rc1/ghmm/discrime.h
ghmm-0.9-rc1/ghmm/randvar.h
ghmm-0.9-rc1/ghmm/model.c
ghmm-0.9-rc1/ghmm/smixturehmm.h
ghmm-0.9-rc1/ghmm/xmlreader.h
ghmm-0.9-rc1/ghmm/xmlwriter.c
ghmm-0.9-rc1/ghmm/scluster.h
ghmm-0.9-rc1/ghmm/rng.h
ghmm-0.9-rc1/ghmm/sfoba.c
ghmm-0.9-rc1/ghmm/sequence.h
ghmm-0.9-rc1/ghmm/kbest.h
ghmm-0.9-rc1/ghmm/matrixop.c
ghmm-0.9-rc1/ghmm/sequence.c
ghmm-0.9-rc1/ghmm/xmlwriter.h
ghmm-0.9-rc1/ghmm/ghmm.h
ghmm-0.9-rc1/ghmm/pviterbi_propagate.c
ghmm-0.9-rc1/ghmm/vector.h
ghmm-