protege/action/ArchiveProject.java
protege/action/AutosynchronizeTrees.java
protege/action/BrowseForFile.java
protege/action/BuildProject.java
protege/action/CascadeWindows.java
protege/action/ChangeIncludedProjects.java
protege/action/ChangeIncludedProjectsPanel.java
protege/action/ChangeProjectStorageFormat.java
protege/action/Clear.java
protege/action/CloseAllWindows.java
protege/action/CloseCurrentView.java
protege/action/CloseProject.java
protege/action/ClsReferencersAction.java
protege/action/ConfigureArchive.java
protege/action/ConfigureArchivePanel.java
protege/action/ConfigureProject.java
protege/action/ConvertUnicodeSequenceAction.java
protege/action/Copy.java
protege/action/CreateClsAction.java
protege/action/CreateProject.java
protege/action/Cut.java
protege/action/DecreaseFontSize.java
protege/action/DeleteClsAction.java
protege/action/DeleteInstancesAction.java
protege/action/DetachCurrentView.java
protege/action/DisplayHtml.java
protege/action/ExitApplication.java
protege/action/ExportPluginAction.java
protege/action/ExportToCsvAction.java
protege/action/ExportToCsvUtil.java
protege/action/FontAction.java
protege/action/ImportPluginAction.java
protege/action/IncludedProjectsPanel.java
protege/action/IncludeProject.java
protege/action/IncreaseFontSize.java
protege/action/InsertUnicodeCharacterAction.java
protege/action/JFrameToFront.java
protege/action/LocalProjectAction.java
protege/action/LookAndFeelAction.java
protege/action/MakeCopiesAction.java
protege/action/MakeCopiesPanel.java
protege/action/ManageIncludedProjectsAction.java
protege/action/ManageIncludedProjectsPanel.java
protege/action/MergeIncludedProjects.java
protege/action/OpenProject.java
protege/action/OpenRemoteProject.java
protege/action/Paste.java
protege/action/PlasticLookAndFeelAction.java
protege/action/ProjectAction.java
protege/action/RedoAction.java
protege/action/ReferencersAction.java
protege/action/RevertProject.java
protege/action/SaveProject.java
protege/action/SaveProjectAs.java
protege/action/SaveProjectToFormat.java
protege/action/SetPreferences.java
protege/action/ShowAboutBox.java
protege/action/ShowAboutPluginsBox.java
protege/action/ShowCommandHistoryAction.java
protege/action/ShowEncodingAndLocales.java
protege/action/ShowIconDialog.java
protege/action/ShowIncludedProjects.java
protege/action/ShowMetrics.java
protege/action/SynchronizeTrees.java
protege/action/UndoAction.java
protege/action/ViewClsAction.java
protege/Applet.java
protege/Application.java
protege/code/generator/wrapping/AbstractWrappedInstance.java
protege/code/generator/wrapping/ClsCode.java
protege/code/generator/wrapping/CodeGeneratorProjectPlugin.java
protege/code/generator/wrapping/EditableJavaCodeGeneratorOptions.java
protege/code/generator/wrapping/JavaCodeGenerator.java
protege/code/generator/wrapping/JavaCodeGeneratorAction.java
protege/code/generator/wrapping/JavaCodeGeneratorOptions.java
protege/code/generator/wrapping/JavaCodeGeneratorPanel.java
protege/code/generator/wrapping/OntologyJavaMappingUtil.java
protege/code/generator/wrapping/ProjectBasedJavaCodeGeneratorOptions.java
protege/code/generator/wrapping/resources/FactoryAdditionalMethods.template
protege/code/generator/wrapping/SlotAtClassCode.java
protege/code/generator/wrapping/SlotCode.java
protege/event/ClsAdapter.java
protege/event/ClsEvent.java
protege/event/ClsEventDispatcher.java
protege/event/ClsListener.java
protege/event/ClsListener.jbx
protege/event/Event.java
protege/event/FacetEvent.java
protege/event/FacetEventDispatcher.java
protege/event/FacetListener.java
protege/event/FrameAdapter.java
protege/event/FrameEvent.java
protege/event/FrameListener.java
protege/event/InstanceAdapter.java
protege/event/InstanceEvent.java
protege/event/InstanceEventDispatcher.java
protege/event/InstanceListener.java
protege/event/KnowledgeBaseAdapter.java
protege/event/KnowledgeBaseEvent.java
protege/event/KnowledgeBaseListener.java
protege/event/ProjectAdapter.java
protege/event/ProjectEvent.java
protege/event/ProjectEventDispatcher.java
protege/event/ProjectListener.java
protege/event/ServerProjectAdapter.java
protege/event/ServerProjectEvent.java
protege/event/ServerProjectListener.java
protege/event/ServerProjectNotificationEvent.java
protege/event/ServerProjectSessionClosedEvent.java
protege/event/ServerProjectStatusChangeEvent.java
protege/event/SlotAdapter.java
protege/event/SlotEvent.java
protege/event/SlotEventDispatcher.java
protege/event/SlotListener.java
protege/event/TransactionAdapter.java
protege/event/TransactionEvent.java
protege/event/TransactionListener.java
protege/event/WidgetAdapter.java
protege/event/WidgetEvent.java
protege/event/WidgetEventDispatcher.java
protege/event/WidgetListener.java
protege/exception/AmalgamatedException.java
protege/exception/AmalgamatedLoadException.java
protege/exception/InvalidProtegeArg.java
protege/exception/ModificationException.java
protege/exception/OntologyException.java
protege/exception/OntologyLoadException.java
protege/exception/ProtegeError.java
protege/exception/ProtegeException.java
protege/exception/ProtegeIOException.java
protege/ex