hmmer-2.3.2/
hmmer-2.3.2/src/
hmmer-2.3.2/src/debug.c
hmmer-2.3.2/src/hmmconvert.c
hmmer-2.3.2/src/display.c
hmmer-2.3.2/src/histogram.c
hmmer-2.3.2/src/pvm.c
hmmer-2.3.2/src/fast_algorithms.c
hmmer-2.3.2/src/hmmalign.c
hmmer-2.3.2/src/structs.h
hmmer-2.3.2/src/emulation.c
hmmer-2.3.2/src/tophits.c
hmmer-2.3.2/src/masks.c
hmmer-2.3.2/src/threads.c
hmmer-2.3.2/src/hmmpostal.c
hmmer-2.3.2/src/hmmcalibrate.c
hmmer-2.3.2/src/hmmindex.c
hmmer-2.3.2/src/emit.c
hmmer-2.3.2/src/hmmsearch.c
hmmer-2.3.2/src/Makefile.in
hmmer-2.3.2/src/hmmbuild.c
hmmer-2.3.2/src/trace.c
hmmer-2.3.2/src/funcs.h
hmmer-2.3.2/src/config.h.in
hmmer-2.3.2/src/misc.c
hmmer-2.3.2/src/weetest.c
hmmer-2.3.2/src/modelmakers.c
hmmer-2.3.2/src/mathsupport.c
hmmer-2.3.2/src/alphabet.c
hmmer-2.3.2/src/states.c
hmmer-2.3.2/src/hmmemit.c
hmmer-2.3.2/src/core_algorithms.c
hmmer-2.3.2/src/hmmio.c
hmmer-2.3.2/src/globals.h
hmmer-2.3.2/src/hmmsearch-pvm.c
hmmer-2.3.2/src/hmmcalibrate-pvm.c
hmmer-2.3.2/src/hmmpfam.c
hmmer-2.3.2/src/plan7.c
hmmer-2.3.2/src/plan9.c
hmmer-2.3.2/src/hmmfetch.c
hmmer-2.3.2/src/camJul97.c
hmmer-2.3.2/src/hmmpfam-pvm.c
hmmer-2.3.2/src/postprob.c
hmmer-2.3.2/src/postprob.h
hmmer-2.3.2/src/prior.c
hmmer-2.3.2/NOTES
hmmer-2.3.2/LICENSE
hmmer-2.3.2/00README
hmmer-2.3.2/squid/
hmmer-2.3.2/squid/revcomp.c
hmmer-2.3.2/squid/rk.c
hmmer-2.3.2/squid/rk.h
hmmer-2.3.2/squid/shuffle_main.c
hmmer-2.3.2/squid/sre_ctype.c
hmmer-2.3.2/squid/dayhoff.c
hmmer-2.3.2/squid/hsregex.c
hmmer-2.3.2/squid/a2m.c
hmmer-2.3.2/squid/00README
hmmer-2.3.2/squid/eps.c
hmmer-2.3.2/squid/gki.c
hmmer-2.3.2/squid/gki.h
hmmer-2.3.2/squid/gsi.c
hmmer-2.3.2/squid/gsi.h
hmmer-2.3.2/squid/msa.c
hmmer-2.3.2/squid/msa.h
hmmer-2.3.2/squid/msf.c
hmmer-2.3.2/squid/sfetch_main.c
hmmer-2.3.2/squid/ssi.c
hmmer-2.3.2/squid/ssi.h
hmmer-2.3.2/squid/compstruct_main.c
hmmer-2.3.2/squid/configure
hmmer-2.3.2/squid/selex.c
hmmer-2.3.2/squid/stopwatch.c
hmmer-2.3.2/squid/stopwatch.h
hmmer-2.3.2/squid/shuffle.c
hmmer-2.3.2/squid/sre_string.c
hmmer-2.3.2/squid/vectorops.c
hmmer-2.3.2/squid/vectorops.h
hmmer-2.3.2/squid/squid.h.in
hmmer-2.3.2/squid/install-sh
hmmer-2.3.2/squid/sreformat_main.c
hmmer-2.3.2/squid/config.sub
hmmer-2.3.2/squid/stack.c
hmmer-2.3.2/squid/phylip.c
hmmer-2.3.2/squid/file.c
hmmer-2.3.2/squid/getopt.c
hmmer-2.3.2/squid/Makefile.in
hmmer-2.3.2/squid/seqsplit_main.c
hmmer-2.3.2/squid/Testsuite/
hmmer-2.3.2/squid/Testsuite/x-base-sreformat
hmmer-2.3.2/squid/Testsuite/x-base-afetch
hmmer-2.3.2/squid/Testsuite/00README
hmmer-2.3.2/squid/Testsuite/rndspeed_main.c
hmmer-2.3.2/squid/Testsuite/x-base-sfetch
hmmer-2.3.2/squid/Testsuite/x-base-sindex
hmmer-2.3.2/squid/Testsuite/Makefile.in
hmmer-2.3.2/squid/Testsuite/x-base-seqstat
hmmer-2.3.2/squid/Testsuite/x-base-shuffle
hmmer-2.3.2/squid/Testsuite/bug-1-sfetch-paths
hmmer-2.3.2/squid/Testsuite/testsuite.pm
hmmer-2.3.2/squid/Testsuite/iospeed_main.c
hmmer-2.3.2/squid/Testsuite/sqdconfig_main.c
hmmer-2.3.2/squid/Testsuite/x-base-alistat
hmmer-2.3.2/squid/test_main.c
hmmer-2.3.2/squid/sqerror.c
hmmer-2.3.2/squid/alignio.c
hmmer-2.3.2/squid/clustal.c
hmmer-2.3.2/squid/cluster.c
hmmer-2.3.2/squid/translate_main.c
hmmer-2.3.2/squid/types.c
hmmer-2.3.2/squid/seqstat_main.c
hmmer-2.3.2/squid/gsi64.c
hmmer-2.3.2/squid/gsi64.h
hmmer-2.3.2/squid/sqio.c
hmmer-2.3.2/squid/seqencode.c
hmmer-2.3.2/squid/stockholm.c
hmmer-2.3.2/squid/stockholm.h
hmmer-2.3.2/squid/sqfuncs.h
hmmer-2.3.2/squid/afetch_main.c
hmmer-2.3.2/squid/weight_main.c
hmmer-2.3.2/squid/squidconf.h.in
hmmer-2.3.2/squid/translate.c
hmmer-2.3.2/squid/sre_random.c
hmmer-2.3.2/squid/sre_random.h
hmmer-2.3.2/squid/sindex_main.c
hmmer-2.3.2/squid/compalign_main.c
hmmer-2.3.2/squid/aligneval.c
hmmer-2.3.2/squid/alistat_main.c
hmmer-2.3.2/squid/revcomp_main.c
hmmer-2.3.2/squid/sre_math.c
hmmer-2.3.2/squid/squidcore.c
hmmer-2.3.2/squid/iupac.c
hmmer-2.3.2/squid/weight.c
hmmer-2.3.2/configure
hmmer-2.3.2/config.guess
hmmer-2.3.2/install-sh
hmmer-2.3.2/config.sub
hmmer-2.3.2/documentation/
hmmer-2.3.2/documentation/man/
hmmer-2.3.2/documentation/man/hmmindex.man
hmmer-2.3.2/documentation/man/hmmalign.man
hmmer-2.3.2/documentation/man/hmmcalibrate.man
hmmer-2.3.2/documentation/man/hmmemit.man
hmmer-2.3.2/documentation/man/hmmbuild.man
hmmer-2.3.2/documentation/man/hmmconvert.man
hmmer-2.3.2/documentation/man/hmmfetch.man
hmmer-2.3.2/documentation/man/hmmsearch.man
hmmer-2.3.2/documentation/man/hmmer.man
hmmer-2.3.2/documentation/man/hmmpfam.man
hmmer-2.3.2/Makefile.in
hmmer-2.3.2/tutorial/
hmmer-2.3.2/tutorial/pkinase.sto
hmmer-2.3.2/tutorial/nucleic.pri
hmmer-2.3.2/tutorial/nucleic.null
hmmer-2.3.2/tutorial/Artemia.fa
hmmer-2.3.2/tutorial/rrm.hmm
hmmer-2.3.2/tutorial/rrm.sto
hmmer-2.3.2/tutorial/amino.pri
hmmer-2.3.2/tutorial/fn3.sto
hmmer-2.3.2/tutorial/7LES_DROME
hmmer-2.3.2/tutorial/globins50.msf
hmmer-2.3.2/tutorial/globins630.fa
hmmer-2.3.2/tutorial/RU1A_HUMAN
hmmer-2.3.2/tutorial/amino.null
hmmer-2.3.2/INSTALL
hmmer-2.3.2/Userguide.pdf
hmmer-2.3.2/testsuite/
hmmer-2.3.2/testsuite/sqc
hmmer-2.3.2/testsuite/fitting_test.c
hmmer-2.3.2/testsuite/evd_test.c
hmmer-2.3.2/testsuite/exercises-pvm.sqc
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